PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG102900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 419aa    MW: 44315.3 Da    PI: 5.1784
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG102900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.7e-13182233155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e+I++L+
  Pavir.7NG102900.1.p 182 QRMTHIAVERNRRRQMNEYLRILRSLMPGS---YVQRGDQASIIGGAIEFIRELE 233
                          79****************************...9******************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-13180236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.81E-14180237No hitNo description
PROSITE profilePS5088815.847181232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-16181246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10182233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-9187238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.392344418IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDKEKGSHHS HLDSFAPLKG AAPGDQPGGG AEMVDYMLGQ APPPAQPPQG QVSFDKLSFS  60
DVLQFADFGP KLALNQPAAS AGVDDPGDDE DDDDGYFFRF QSLPSLPGGQ GQHHADDREG  120
SKATADDGGA HNGGGGGVSE STTLVQQADG GGRAEKGGGD QGKSGRRKRP RTVKTSEEVE  180
SQRMTHIAVE RNRRRQMNEY LRILRSLMPG SYVQRGDQAS IIGGAIEFIR ELEQLIQCLE  240
SQKRRRLYGG SGDAPRPVVD AAGAGAPTST QQHHQPQVPP AAAFFPPSLP FPVASSGGGD  300
GGAAKILDLE AGGADAASGL REEVAENKSC LADIEVRALG ADAMIKILSR RRPGQLIKTI  360
AALEDMQMSI LHTNITTIEQ TVLYSFNVKI LGEARYSAEE IAGAVHQILS FIDVNYVL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150158GGRAEKGGG
2182193RMTHIAVERNRR
3242246KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277501e-134KJ727750.1 Zea mays clone pUT5691 bHLH transcription factor (bHLH22) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961059.10.0PREDICTED: transcription factor FAMA
SwissprotQ56YJ81e-114FAMA_ARATH; Transcription factor FAMA
TrEMBLA0A0A9GYP10.0A0A0A9GYP1_ARUDO; FMA
STRINGSi021834m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95023340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.11e-104bHLH family protein